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Buijsman, M.C., B.K. Arbic, J.A.M. Green, R.W. Helber, J.G. Richman, J.F. Shriver, P.G. TIMKO, and A. Wallcraft, 2015: Optimizing internal wave drag in a forward barotropic model with semidiurnal tides. Ocean Modelling 85, 42-55, doi:10.1016/j.ocemod.2014.11.003.

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Stammer, D., R.D. Ray, O.B. Andersen, B.K. Arbic, W. Bosch, L. Carrere, Y. Cheng, D.S. Chinn, B.D. Dushaw, G.D. Egbert, S.Y. Erofeeva, H.S. Fok, J.A.M. Green, S. Griffiths, M.A. King, V. Lapin, F.G. Lemoine, S.B. Luthcke, F. Lyard, J. Morison, M. Müller, L. Padman, J.G. Richman, J.F. Shriver, C.K. Shum, E. Taguchi, and Y. Yi, 2014: Accuracy assessment of global barotropic ocean tide models. Reviews of Geophysics 52, 243-282, doi:10.1002/2014RG000450.

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Arbic, B.K., M. MüLLER, J.G. Richman, J.F. Shriver, A.J. MORTEN, R.B. Scott, G. Serazin, and T. Penduff, 2014: Geostrophic turbulence in the frequency-wavenumber domain: Eddy-driven low-frequency variability. Journal of Physical Oceanography 44, 2050-2069, doi:10.1175/JPO-D-13-054.1.

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Shriver, J.F., J.G. Richman, and B.K. Arbic, 2014: How stationary are the internal tides in a high-resolution global ocean circulation model? Journal of Geophysical Research Oceans 119, 2769-2787, doi:10.1002/2013JC009423.

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Metzger, E.J., O.M. Smedstad, P.G. Thoppil, H.E. Hurlburt, J.A. Cummings, A.J. Wallcraft, L. Zamudio, D.S. Franklin, P.G. Posey, M.W. Phelps, P.J. Hogan, F.L. Bub, and C.J. DeHaan. 2014. US Navy operational global ocean and Arctic ice prediction systems. Oceanography 27(3):32–43, http://dx.doi.org/10.5670/oceanog.2014.66.

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Cummings, J.A. and O.M. Smedstad, 2013: Variational data analysis for the global ocean. In: S.K. Park and L. Xu (Eds.), Data Assimilation for Atmospheric, Oceanic and Hydrologic Applications Vol. II., DOI 10.1007/978-3-642-35088-7_13, Springer-Verlag Berlin Heidelberg.

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Timko, P. G., B. K. Arbic, J. G. Richman, R. B. Scott, E. J. Metzger, and A. J. Wallcraft (2013), Skill testing a three-dimensional global tide model to historical current meter records, J. Geophys. Res. Oceans, 118, 6914–6933, doi:10.1002/2013JC009071.

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David S. Trossman, Brian K. Arbic, Stephen T. Garner, John A. Goff, Steven R. Jayne, E. Joseph Metzger, Alan J. Wallcraft, Impact of parameterized lee wave drag on the energy budget of an eddying global ocean model, Ocean Modelling, Volume 72, December 2013, Pages 119-142, ISSN 1463-5003, http://dx.doi.org/10.1016/j.ocemod.2013.08.006.

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L. S. Quaresma, Super-inertial tides over irregular narrow shelves, PhD dissertation, 176 pp, 2012.

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Luis S. Quaresma, Annick Pichon, Modelling the barotropic tide along the West-Iberian margin, Journal of Marine Systems, Volumes 109–110, Supplement, January 2013, Pages S3-S25, ISSN 0924-7963, http://dx.doi.org/10.1016/j.jmarsys.2011.09.016.

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A. Pichon, Y. Morel, R. Baraille, L.S. Quaresma, Internal tide interactions in the Bay of Biscay: Observations and modelling, Journal of Marine Systems, Volumes 109–110, Supplement, January 2013, Pages S26-S44, ISSN 0924-7963, http://dx.doi.org/10.1016/j.jmarsys.2011.07.003.

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Shriver, J. F., B. K. Arbic, J. G. Richman, R. D. Ray, E. J. Metzger, A. J. Wallcraft, and P. G. Timko (2012), An evaluation of the barotropic and internal tides in a high-resolution global ocean circulation model, J. Geophys. Res., 117, C10024, doi:10.1029/2012JC008170.

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Richman, J. G., B. K. Arbic, J. F. Shriver, E. J. Metzger, and A. J. Wallcraft (2012), Inferring dynamics from the wavenumber spectra of an eddying global ocean model with embedded tides, J. Geophys. Res., 117, C12012, doi:10.1029/2012JC008364.

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Persechino, A., Marsh, R., Sinha, B., Megann, A., Blaker, A., New, A., Decadal-timescale changes of the Atlantic overturning circulation and climate in a coupled climate model with a hybrid-coordinate ocean component. Climate Dynamics, Springer Berlin, 0930-7575, Earth and Environmental Science, pp 1021-1042, vol 39, http://dx.doi.org/10.1007/s00382-012-1432-y.

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Timko, P. G., B. K. Arbic, J. G. Richman, R. B. Scott, E. J. Metzger, and A. J. Wallcraft (2012), Skill tests of three-dimensional tidal currents in a global ocean model: A look at the North Atlantic, J. Geophys. Res., 117, C08014, doi:10.1029/2011JC007617.

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Arbic, B.K., J.G. Richman, J.F. Shriver, P.G. Timko, E.J. Metzger, and A.J. Wallcraft. 2012. Global modeling of internal tides within an eddying ocean general circulation model. Oceanography 25(2):20–29, http://dx.doi.org/10.5670/oceanog.2012.38.

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Joseph, S., A. J. Wallcraft, T. G. Jensen, M. Ravichandran, S. S. C. Shenoi, and S. Nayak (2012), Weakening of spring Wyrtki jets in the Indian Ocean during 2006–2011, J. Geophys. Res., 117, C04012, doi:10.1029/2011JC007581.

 

A. Srinivasan, E.P. Chassignet, L. Bertino, J.M. Brankart, P. Brasseur, T.M. Chin, F. Counillon, J.A. Cummings, A.J. Mariano, O.M. Smedstad, W.C. Thacker, A comparison of sequential assimilation schemes for ocean prediction with the HYbrid Coordinate Ocean Model (HYCOM): Twin experiments with static forecast error covariances, Ocean Modelling, Volume 37, Issues 3–4, 2011, Pages 85-111, ISSN 1463-5003, 10.1016/j.ocemod.2011.01.006.

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Zamudio, L., E. J. Metzger, and P. Hogan (2011), Modeling the seasonal and interannual variability of the northern Gulf of California salinity, J. Geophys. Res., 116, C02017, doi:10.1029/2010JC006631.

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Diane K. Adams, Dennis J. McGillicuddy, Jr., Luis Zamudio, Andreas M. Thurnherr, Xinfeng Liang, Olivier Rouxel, Christopher R. German, and Lauren S. Mullineaux. Surface-Generated Mesoscale Eddies Transport Deep-Sea Products from Hydrothermal Vents. Science 29 April 2011: 332 (6029), 580-583. [DOI:10.1126/science.1201066]

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Luis Zamudio, E. Joseph Metzger, Patrick J. Hogan, Gulf of California response to Hurricane Juliette, Ocean Modelling, Volume 33, Issues 1-2, 2010, Pages 20-32, ISSN 1463-5003, DOI: 10.1016/j.ocemod.2009.11.005.

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S. Lahaye, F. Gouillon, R. Baraille, A. Pichon, L. Pineau‐Guillou, and Y. Morel. A numerical scheme for modeling tidal wetting and drying. JOURNAL OF GEOPHYSICAL RESEARCH, VOL. 116, C03028, doi:10.1029/2010JC006666, 2011.

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Yao, F., and W. E. Johns (2010), A HYCOM modeling study of the Persian Gulf: 2. Formation and export of Persian Gulf Water, J. Geophys. Res., 115, C11018, doi:10.1029/2009JC005788.

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Yao, F., and W. E. Johns (2010), A HYCOM modeling study of the Persian Gulf: 1. Model configurations and surface circulation, J. Geophys. Res., 115, C11017, doi:10.1029/2009JC005781.

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Trasviña, A., K. J. Heywood, A. H. H. Renner, S. E. Thorpe, A. F. Thompson, and L. Zamudio (2011), The impact of high-frequency current variability on dispersion off the eastern Antarctic Peninsula, J. Geophys. Res., 116, C11024, doi:10.1029/2011JC007003.

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Samuelsen, A., Bertino, L., and Hansen, C. 2009: Impact of data assimilation of physical variables on the spring bloom from TOPAZ operational runs in the North Atlantic. Ocean Science. 5:635-647.

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Megann, A. P., A. L. New, A. T. Blaker, B. Sinha, 2010: The Sensitivity of a Coupled Climate Model to Its Ocean Component. J. Climate, 23, 5126–5150. doi: http://dx.doi.org/10.1175/2010JCLI3394.1

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Rafael V. Schiller, Vassiliki H. Kourafalou, Modeling river plume dynamics with the HYbrid Coordinate Ocean Model, Ocean Modelling 33 (2010) 101–117.

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Backeberg, B. C., and C. J. C. Reason (2010), A connection between the South Equatorial Current north of Madagascar and Mozambique Channel Eddies, Geophys. Res. Lett., 37, L04604, doi:10.1029/2009GL041950.

 

Liu, Y., P. MacCready, B. M. Hickey, E. P. Dever, P. M. Kosro, and N. S. Banas (2009), Evaluation of a coastal ocean circulation model for the Columbia River plume in summer 2004, J. Geophys. Res., 114, C00B04, doi:10.1029/2008JC004929.

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Zheng, Y., T. Shinoda, G. N. Kiladis, J-L Lin, E. J. Metzger, H. E. Hurlburt, and B. S. Giese, 2010: Upper-ocean processes under the stratus cloud deck in the southeast Pacific Ocean. J. Phys. Oceanogr., 40, 103-120.

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Download this file (10.1175_2009JPO4213.1.pdf)10.1175_2009JPO4213.1.pdf2010Zheng 5172 Kb

 

Shinoda, T, and J-L. Lin, 2009: Interannual variability of the upper ocean in the southeast Pacific stratus cloud region. J. Climate, 22, 5072-5087.

 

I. Keghouche, F. Counillon, L. Bertino (2010). Modeling dynamics and thermodynamics of icebergs in the Barents Sea from 1987 to 2005 JGR, 115, C12062, doi:10.1029/2010JC006165

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Xie Jiping, Francois Counillon, Jiang Zhu, Laurent Bertino, 2010: An eddy-resolving tidal-driven model of the South China Sea assimilating along-track SLA data using the EnOI. Ocean Science, 7, 609-627.

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Li Xichen, Jiang Zhu, Yiguo Xiao and Ruiwen Wang, 2010: A model-based observation thinning scheme for assimilation of high resolution SST in the shelf and coastal seas around China. Journal of Atmospheric and Oceanic Technology. 27(6),1044–1058.

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Robert B. Scott, Brian K. Arbic, Eric P. Chassignet, Andrew C. Coward, Mathew Maltrud, William J. Merryfield, Ashwanth Srinivasan, Anson Varghese, Total kinetic energy in four global eddying ocean circulation models and over 5000 current meter records, Ocean Modelling, Volume 32, Issues 3–4, 2010, Pages 157-169, ISSN 1463-5003, 10.1016/j.ocemod.2010.01.005.

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Wan, Liying, Laurent Bertino, Jiang Zhu, 2010: Assimilating Altimetry Data into a HYCOM Model of the Pacific: Ensemble Optimal Interpolation versus Ensemble Kalman Filter. J. Atmos. Oceanic Technol., 27, 753–765. doi: http://dx.doi.org/10.1175/2009JTECHO626.1

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Xie J.P., and J Zhu, 2010: Optimal ensemble interpolation schemes for assimilation of Argo profiles into HYCOM. Ocean Modelling. 33. 283–298

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Brian K. Arbic, Alan J. Wallcraft, E. Joseph Metzger, Concurrent simulation of the eddying general circulation and tides in a global ocean model, Ocean Modelling, Volume 32, Issues 3–4, 2010, Pages 175-187, ISSN 1463-5003, 10.1016/j.ocemod.2010.01.007.

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Peng, G., Z. Garraffo, G.R. Halliwell,,O.-M. Smedstad,C.S. Meinen, V. Kourafalou, and P. Hogan, 2009: Temporal variability of the Florida Current Transport at 27 Degrees North. In: Ocean Circulation and El Nino. Eds, J. A. Long and D. S. Wells, Nova Publishers, NY. 291 pp. (pp.119-137).

 

Wallcraft, A. J., A. B. Kara, C. N. Barron, E. J. Metzger, R. L. Pauley, and M. A. Bourassa, 2009: Comparisons of monthly mean 10 m wind speeds from satellites and NWP products over the global ocean. J. Geophys. Res., 114, D16109, doi:10.1029/2008JD011696.

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Dombrowsky, E., L. Bertino, G.B. Brassington, E.P. Chassignet, F. Davidson, H.E. Hurlburt, M. Kamachi, T. Lee, M.J. Martin, S. Mei, and M. Tonani, 2009. GODAE systems in operation. Oceanography, 22(3), 80-95.

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Legg, S., Y. Chang, E.P. Chassignet, G. Danabasoglu, T. Ezer, A.L. Gordon, S. Griffes, R. Hallberg, L. Jackson, W. Large, T. Özgökmen, H. Peters, J. Price, U. Riemenschneider, W. Wu, X. Xu, J. Yang, 2009. Improving oceanic overflow representation in climate models: the Gravity Current Entrainment Climate Process Team. Bull. Amer. Met. Soc., 90(4), 657-670, doi: 10.1175/2008BAMS2667.1.

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Cornillon, P., J. Adams, M.B. Blumenthal, E.P. Chassignet, E. Davis, S. Hankin, J. Kinter, R. Mendelssohm, J.T. Potemra, A. Srinivasan, and J. Sirott, 2009. NVODS and the development of OPeNDAP - an integrative tool for oceanographic data systems. Oceanography, 22(2), 116-127.

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Download this file (Cornillon-OCEANOGRAPHY-NOPP.pdf)Cornillon-OCEANOGRAPHY-NOPP.pdf2009Cornillon 425 Kb

 

Chassignet, E.P., H.E. Hurlburt, E.J. Metzger, O.M. Smedstad, J. Cummings, G.R. Halliwell, R. Bleck, R. Baraille, A.J. Wallcraft, C. Lozano, H.L. Tolman, A. Srinivasan, S. Hankin, P. Cornillon, R. Weisberg, A. Barth, R. He, F. Werner, and J. Wilkin, 2009. U.S. GODAE: Global Ocean Prediction with the HYbrid Coordinate Ocean Model (HYCOM). Oceanography, 22(2), 64-75.

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Griffies, S.M., A. Biastoch, C. Boening, F. Bryan, G. Danabasoglu, E.P. Chassignet, M.H. England, R. Gerdes, H. Haak, R.W. Hallberg, W. Hazeleger, J. Jungclaus, W.G. Large, G. Madec, A. Pirani, B.L. Samuels, M. Scheinert, A.S. Gupta, C.A. Severijns, H.L. Simmons, A.-M. Treguier, M. Winton, S. Yeager, and J. Yin, 2009. Coordinated Ocean-Ice Reference Experiments (COREs). Ocean Modelling, 26, 1-46, doi:10.1016/j.ocemod.2008.08.007.

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Liying Wan and Jiang Zhu and Hui Wang and Changxiang Yan and Laurent Bertino (2009). A "Dressed" Ensemble Kalman Filter Using the Hybrid Coordinate Ocean Model in the Pacific / Adv. Atmos. Sci., *26*(5), pp. 1042-1052.

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Bjørn Backeberg and Laurent Bertino and Johnny A. Johannessen (2009). Evaluating two numerical advection schemes in HYCOM for eddy-resolving modelling of the Agulhas Current. Ocean Science, V. 5, No 2, pp. 173-190.

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Laurent Bertino and Knut Arild Liseter (2008). The TOPAZ monitoring and prediction system for the Atlantic and Arctic Oceans Journal of Operational Oceanography, V. 1, No 2, pp. 15-19.

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Samuelsen A, Huse G, Hansen C (2009) Shelf recruitment of Calanus finmarchicus off the west coast of Norway: role of physical processes and timing of diapause termination. Mar Ecol Prog Ser 386:163-180.

 

Chang, Y., Z.D. Garraffo, H. Peters, T.M. Özgökmen, 2009: Pathways of Nordic Overflows from climate model scale and eddy resolving simulations. Ocean Modelling, 29, 66-84.

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Kara, A. B., A. J. Wallcraft, H. E. Hurlburt and W-Y. Loh, 2009: Quantifying SST errors from an OGCM in relation to atmospheric forcing variables. Ocean Modelling, 29, 43-57.

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Kara, A. B., A. J. Wallcraft, H. E. Hurlburt, and W.-Y. Loh, 2009: Which surface atmospheric variable drives the seasonal cycle of sea surface temperature over the global ocean? J. Geophys. Res., 114, D05101, doi:10.1029/2008JD010420.

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Kara, A. B., C. N. Barron, and T. P. Boyer, 2009: Evaluations of SST climatologies in the tropical Pacific Ocean. J. Geophys. Res., 114, C02021, doi:10.1029/2008JC004909.

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Counillon, F., and L. Bertino, 2009: High-resolution ensemble forecasting for the Gulf of Mexico eddies and fronts. Ocean Dynamics, 59, 83-95, doi 10.1007/s10236-008-0167-0.

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Kourafalou, V.H., G. Peng, H. Kang, P.J. Hogan, O.M. Smedstadt, R.H. Weisberg, 2009: Evaluation of Global Ocean Data Assimilation Experiment products on South Florida nested simulations with the Hybrid Coordinate Ocean Model. Ocean Dynamics, 59, 47–66, doi 10.1007/s10236-008-0160-7.

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Hansen, C., and A. Samuelsen, 2008: Influence of horizontal model grid resolution on the simulated primary production in an embedded primary production model in the Norwegian Sea. Journal of Marine Systems, 75, 236-244, doi:10.1016/j.jmarsys.2008.10.004.

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Counillon, F., and L. Bertino, 2008: Ensemble Optimal Interpolation: multivariate properties in the Gulf of Mexico. Tellus, 61, 296-308, doi 10.1111/j.1600-0870.2008.00383.x.

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Shinoda, T., P. E. Roundy, G. N. Kiladis: Variability of intraseasonal Kelvin waves in the equatorial Pacific Ocean J. Phys. Oceanogr., 38, 921-944.

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Kara, A. B., E. J. Metzger, H. E. Hurlburt, A. J. Wallcraft, and E. P. Chassignet, 2008: Multistatistics metric evaluation of ocean general circulation model sea surface temperature: Application to 0.08 degree Pacific Hybrid Coordinate Ocean Model simulations. J. Geophys. Res., 113, C12018, doi:10.1029/2008JC004878.

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Kara, A. B., and C. N. Barron, 2008: Comment on "Seasonal heat budgets of the Red and Black seas". by Matsoukas et al.. J. Geophys. Res., 113, C12008, doi:10.1029/2008JC004760.

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Wallcraft, A. J., A. B. Kara, H. E. Hurlburt, E. P. Chassignet, and G. H. Halliwell, 2008: Value of bulk heat flux parameterizations for ocean SST prediction. J. Mar. Sys., 74, 241-258, doi:10.1016/j.jmarsys.2008.01.009.

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Heffner D. M., B. Subrahmanyam, J. F. Shriver, 2008: Indian Ocean Rossby waves detected in HYCOM sea surface salinity. Geophys. Res. Lett., 35, L03605, doi:10.1029/2007GL032760.

 

Kara, A. B., A. J. Wallcraft, H. E. Hurlburt, and E. V. Stanev, 2008: Air-sea fluxes and river discharges in the Black Sea with a focus on the Danube and Bosphorus. J. Mar. Syst., 74, 74-95, doi:10.1016/j.jmarsys.2007.11.010.

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Kara, A. B., A. J. Wallcraft, C. N. Barron, H. E. Hurlburt, and M. A. Bourassa, 2008: Accuracy of 10 m winds from satellites and NWP products near land-sea boundaries. J. Geophys. Res., 113, C10020, doi:10.1029/2007JC004516.

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Hurlburt H.E., E.P. Chassignet, J.A. Cummings, A.B. Kara, E.J. Metzger, J.F. Shriver, O.M. Smedstad, A.J. Wallcraft, and C.N. Barron, 2008: Eddy-resolving global ocean prediction. In "Eddy-Resolving Ocean Modeling", M. Hecht and H. Hasumi, Eds., AGU Monograph Series, 353-382.

 

Kara, A. B., C. N. Barron, A. J. Wallcraft, and T. Oguz, 2008: Inter-annual variability of sea surface height over the Black Sea: Relation to climatic patterns. Earth Interactions, 12, doi:10.1175/2008EI259.1.

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Kara, A. B., C. N. Barron, A. J. Wallcraft, T. Oguz, and K. S. Casey, 2008: Advantages of fine resolution SSTs for small ocean basins: Evaluation in the Black Sea. J. Geophys. Res., 113, C08013, doi:10.1029/2007JC004569.

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Zamudio, L., P. J. Hogan, and E. J. Metzger: Summer generation of the Southern Gulf of California eddy train. J. Geophys. Res., 113, C06020, doi:10.1029/2007JC004467.

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B. Backeberg, J. A. Johannessen, L. Bertino, C. J. Reason, 2008: The greater Agulhas Current system: An integrated study of its mesoscale variability. Journal of Operational Oceanography, 1, (1), 29-44.

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Kara, A.B., A. A. Wallcraft, and M. A. Bourassa, 2008: Air-sea stability effects on the 10 m winds over the global ocean: Evaluations of air-sea flux algorithms. J. Geophys. Res., 113, C04009, doi:10.1029/2007JC004324.

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Hofmann, E. E., J.-N. Druon, K. Fennel, M. Friedrichs, D. Haidvogel, C. Lee, A. Mannino, C. McClain, R. Najjar, J. Siewert, J. O’Reilly, D. Pollard, M. Previdi, S. Seitzinger, S. Signorini, J. Wilkin, 2008: Eastern U.S. Continental Shelf Carbon Budget: Integrating Models, Data Assimilation, and Analysis. Oceanography, 21, 86-104.

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Thacker, W. W., 2008: Estimating Salinity between 25° and 45°S in the Atlantic Ocean Using Local Regression. Journal of Atmospheric and Oceanic Technology, 25, 114-130, doi: 10.1175/2007JTECHO530.1

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Chang, Y., T. M. Ozgokmen, H. Peters, X. Xu, 2008: Numerical Simulation of the Red Sea Outflow Using HYCOM and Comparison with REDSOX Observations. JPO, 38, 337-358, doi: 10.1175/2007JPO3697.1

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Zamudio, L., P. J. Hogan, 2008: Nesting the Gulf of Mexico in Atlantic HYCOM: Oceanographic processes generated by Hurricane Ivan. Ocean Modelling, 21, 106-125.

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Kara, A.B., A.J. Wallcraft, P.J. Martin, and E.P. Chassignet, 2008: Performance of mixed layer models in simulating SST in the Equatorial Pacific Ocean. J. Geophys. Res., 113, C02020, doi:10.1029/2007JC004250.

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K.A. Lisaeter, G. Evensen and S. Laxon, 2007: Assimilating synthetic CryoSat sea ice thickness in a coupled ice-ocean model. J. Geophys. Res., 112, C07023, doi:10.1029/2006JC003786.

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Kelly, K., L. Thompson, W. Cheng and E.J. Metzger, 2007: Evaluation of HYCOM in the Kuroshio Extension region using new metrics. J. Geophys. Res. , 112, C01004, doi:10.1029/2006JC003614.

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Lee, S.-K., D.B. Enfield, and C. Wang, 2007: What drives seasonal onset and decay of the Western Hemisphere Warm Pool?. Journal of Climate, 20 2133-2146.

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Thacker, W. W., 2007: Data assimilation with inequality constraints. Ocean Modelling, 16, 264–276, doi:10.1016/j.ocemod.2006.11.001

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Chassignet, E.P., H.E. Hurlburt, O.M. Smedstad, G.R. Halliwell, P.J. Hogan, A.J. Wallcraft, R. Baraille, and R. Bleck, 2007: The HYCOM (HYbrid Coordinate Ocean Model) data assimilative system. J. Mar. Sys., 65, 60-83.

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Aretxabaleta, A., B.O. Blanton, H.E. Seim, F.E. Werner, J.R. Nelson, and E.P. Chassignet, 2007: Cold event in the South Atlantic Bight during summer of 2003: Model simulations and implications. J. Geophys. Res., 112, C05022, doi:10.1029/2006JC003903.

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Xu, X., E.P. Chassignet, J.F. Price, T.M. Özgökmen, and H. Peters, 2007: A regional modeling study of the entraining Mediterranean outflow. J. Geophys. Res., 112, C12005, doi:10.1029/2007JC004145.

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Halkides, D. J., W. Han, T. Lee, and Y. Masumoto, 2007: Effects of sub-seasonal variability on seasonal-to-interannual Indian Ocean meridional heat transport. Geophys. Res. Lett., 34, L12605, doi:10.1029/2007GL030150.

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Kara, A. B., A. J. Wallcraft, E. J. Metzger, H. E. Hurlburt, and C. W. Fairall, 2007: Wind stress drag coefficient over the global ocean. J. Climate, 20, 5856-5864.

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Winther, N. G., Morel, Y., Evensen, G., 2007: Efficiency of high order numerical schemes for momentum advection. J. Marine Systems., 67, 31-46, doi:10.1016/j.jmarsys.2006.08.004.

 

Chen, W., M. J. McPhaden, D. Zhang, E. J. Metzger, 2007: Recent Changes in the Pacific Subtropical Cells Inferred from an Eddy-Resolving Ocean Circulation Model. J. Phys. Oceanogr., 37, 1340-1356.

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Kara, A. B., and C. N. Barron, 2007: Fine-resolution satellite--based daily sea surface temperatures over the global ocean. J. Geophys. Res., 112, C05041, doi:10.1029/2006JC004021.

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Kara, A. B., H. E. Hurlburt, and W.-Y. Loh, 2007: Which near-surface atmospheric variable drives air-sea temperature differences over the global ocean? J. Geophys. Res., 112, C05020, doi:10.1029/2006JC003833.

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Han, W., D. Yuan, W. T. Liu, D. J. Halkides, 2007: Intraseasonal variability of Indian Ocean sea surface temperature during boreal winter: Madden-Julian Oscillation versus submonthly forcing and processes. J. Geophys. Res., 112(C4), C04001, doi:10.1029/2006JC003791.

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Kara, A. B., E. J. Metzger, and M. A. Bourassa, 2007: Ocean current and wave effects on wind stress drag coefficient over the global ocean. Geophys. Res. Lett., 34, L01604, doi:10.1029/2006GL027849.

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Kara, A.B., A.J. Wallcraft, and H.E. Hurlburt, 2007: A correction for land contamination of atmospheric variables near land-sea boundaries. J. Phys. Oceanogr., 37, 803-818.

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Hogan, P. J., and H. E. Hurlburt, 2006: Why do IntraThermocline Eddies Form in the Japan/East Sea? A modeling perspective Oceanography, 19(3), 134-143.

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Thacker, W.C., 2006: Estimating salinity to complement observed temperature: 1. Gulf of Mexico. Journal of Marine Systems, 65, 224-248, doi:10.1016/j.jmarsys.2005.06.008

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Thacker, W.C., and L. Sindlinger, 2006: Estimating salinity to complement observed temperature: 2. Northwestern Atlantic. Journal of Marine Systems, 65, 249-267, doi:10.1016/j.jmarsys.2005.06.007

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Klinger, B. A., C. Cruz, and P. Schopf, 2006: Targeted Shapiro filter in an ocean model. Ocean Modelling, 13, 148-155.

 

Winther, N. G., Johannessen, J. A., 2006: North sea circulation: Atlantic inflow and its destination. J. Geophys. Res., 111, C12018, doi:10.1029/2005JC003310.

 

Kara, A. B, and H. E. Hurlburt, 2006: Daily inter--annual simulations of SST and MLD using atmospherically--forced OGCMs: Model evaluation in comparison to buoy time series. J. Mar. Sys., 62, 95--119.

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C. N. Barron and A. B. Kara, 2006: Satellite-based daily SSTs over the global ocean Geophys. Res. Lett., 33, L15603, doi:10.1029/2006GL026356.

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Winther, N. G. and Evensen, G., 2006: A hybrid coordinate ocean model for shelf sea simulation. Ocean Modelling, 13(3-4), 221-237, doi:10.1016/j.ocemod.2006.01.004.

 

Olascoaga, M. J., I. I. Rypina, M. G. Brown, F. J. Beron-Vera, H. Koçak, L. E. Brand, G. R. Halliwell, and L. K Shay, 2006: Persistent Transport Barrier on the West Florida Shelf. Geophys. Res. Lett., 33, L22603, doi:10.1029/2006GL027800.

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Hogan, P.J., O.M. Smedstad, S. Reidlinger, A.J. Wallcraft, G.A. Jacobs, W. Teague and H.E. Hurlburt, 2006: Model-data comparisons and numerical modeling and prediction efforts at the Naval Research Laboratory. Proceedings of the CREAMS/PICES International Workshop on Model/Data Intercomparison for the Japan/East Sea, 21-22 August 2006, Busan, Korea, pp. 69-73.

 

Hogan, P.J. and H.E. Hurlburt, 2006: Why do intra thermocline eddies form in the Japan/East Sea? A modeling perspective. Oceanography, 19(3), 134-143.

 

Chassignet, E.P., and J. Verron (Eds.), 2006: Ocean Weather Forecasting: An Integrated View of Oceanography. Springer, 577 pp.

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Rothstein, L.M., J.J. Cullen, M. Abott, E.P. Chassignet, K. Denman, S. Doney, H. Ducklow, K. Fennel, M. Follows, D. Haidvogel, E. Hoffman, D. Karl, J. Kindle, I. Lima, M. Maltrud, C. McClain, D. McGillicuddy, J. Olascoaga, Y. Spitz, J. Wiggert, and J. Yoder, 2006: Modeling ocean ecosystems - the PARADIGM program. Oceanography, 19, 16-45.

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Xu, X., Y.S. Chang, H. Peters, T.M. Özgökmen,, and E.P. Chassignet, 2006: Parameterization of gravity current entrainment for ocean circulation models using a high-order 3D nonhydrostatic spectral element model. Ocean Modelling, 14, 19-44.

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Yuan, D., and W. Han, 2006: Roles of Equatorial Waves and Western Boundary Refelection in the Seasonal Circulation of the Equatorial Indian Ocean. JPO, 36, 930-944.

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Han, W., W. T. Liu, and J Lin, 2006: Impact of atmospheric submonthly oscillations on sea surface temperature of the tropical Indian Ocean. Geophysical Research Letters, 33, doi:10.1029/2005GL025082.

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Han, W., T. Shinoda, L.-L. Fu, and J. P. McCreary, 2006: Impact of Atmospheric Intraseasonal Oscillations on the Indian Ocean Dipole during the 1990s. JPO, 36, 670-690.

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Chassignet, E.P., H.E. Hurlburt, O.M. Smedstad, G.R. Halliwell, A.J. Wallcraft, E.J. Metzger, B.O. Blanton, C. Lozano, D.B. Rao, P.J. Hogan, and A. Srinivasan, 2006: Generalized vertical coordinates for eddy-resolving global and coastal ocean forecasts. Oceanography, 19, 20-31.

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Bleck, R., 2006: On the use of hybrid vertical coordinates in ocean circulation modeling. In: Ocean Weather Forecasting: An Integrated View of Oceanography, Chassignet, E.P., and J. Verron (Eds.), Springer, 109-126.

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Chassignet, E.P., H.E. Hurlburt, O.M. Smedstad, G.R. Halliwell, P.J. Hogan, A.J. Wallcraft, and R. Bleck, 2006: Ocean prediction with the Hybrid Coordinate Ocean Model (HYCOM). In: Ocean Weather Forecasting: An Integrated View of Oceanography, Chassignet, E.P., and J. Verron (Eds.), Springer, 413-426.

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Sun, W., M. Cetin, W. C. Thacker, T. M. Chin, and A. S. Willsky, 2006: Variational approaches on discontinuity localization and field estimation in sea surface temperature and soil moisture. IEEE Transactions on Geoscience and Remote Sensing, 44, 336-350.

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Kara, A. B., H. E. Hurlburt, A. J. Wallcraft, and M. A. Bourassa, 2006: CORRIGENDUM for Black Sea mixed layer sensitivity to various wind and thermal forcing products on climatological time scales. J. Climate, 19, 494-495.

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Shinoda, T., and W. Han 2005: Influence of Indian Ocean dipole on atmospheric subseasonal variability. J. Climate., 18, 3891-3909.

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Lopez, M., L. Zamudio, and F Padilla, 2005: Effects of the 1997– 1998 El Nino on the exchange of the northern Gulf of California. J. Geophys. Res., 110, C11005, doi:10.1029/2004JC002700.

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Cummings, J.A., 2005: Operational multivariate ocean data assimilation. Quart. J. Royal Met. Soc., Part C, 131(613), 3583-3604.

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Chassignet, E.P., H.E. Hurlburt, O.M. Smedstad, C.N. Barron, D.S. Ko, R.C. Rhodes, J.F. Shriver, A.J. Wallcraft, and R.A. Arnone, 2005: Assessment of ocean prediction systems in the Gulf of Mexico using ocean color. In "Circulation in the Gulf of Mexico: Observations and models", W. Sturges and A. Lugo-Fernadez, Eds., AGU Monograph Series, 161, 87-100.

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Kara, A. B., H. E. Hurlburt, A. J. Wallcraft, and M. A. Bourassa, 2005: Black Sea mixed layer sensitivity to various wind and thermal forcing products on climatological time scales. J. Climate, 18(24), 5266--5293.

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Chang, Y., X. Xu, T.M. Özgökmen, E.P. Chassignet, H. Peters, and P.F. Fisher, 2005: Comparison of gravity current mixing parameterizations and calibration using a high-resolution 3D nonhydrostatic spectral element model. Ocean Modelling, 10, 342-368, doi:10.1016/j.ocemod.2004.11.002

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Han, W., 2005: Origins and dynamics of the 90-day and 30-60 day variations in the equatorial Indian Ocean. J. Phys. Oceanogr., 35, 708-728.

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Lee, S.-K., D. B. Enfield, and C. Wang, 2005: Ocean general circulation model sensitivity experiments on the annual cycle of Western Hemisphere Warm Pool. J. Geophys. Res., 110, C09004, doi:10.1029/2004JC002640.

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Kara, A. B., H. E. Hurlburt, and A. J. Wallcraft, 2005: Stability-dependent exchange coefficients for air-sea fluxes. J. Atmos. Oceanic. Technol., 22, 1080-1094.
[see also http://www7320.nrlssc.navy.mil/nasec/nasec.html]

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Birol F., J.-M. Brankart, J.M. Lemoine, P. Brasseur, and J. Verron, 2005: Assimilation of satellite altimetry referenced to the new GRACE geoid estimate. Geophys. Res. Letters, 32, L06601, doi :10.1029/2004GL02329.

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Kara, A. B., A. J. Wallcraft, and H. E. Hurlburt, 2005: How does solar attenuation depth affect the ocean mixed layer? Water turbidity and atmospheric forcing impacts on the simulation of seasonal mixed layer variability in the turbid Black Sea. J. Climate, 18, 389-409.

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Kara, A. B., A. J. Wallcraft, and H. E. Hurlburt, 2005: A new solar radiation penetration scheme for use in ocean mixed layer studies: an application to the Black Sea using a fine-resolution Hybrid Coordinate Ocean Model (HYCOM)*. J. Phys. Oceanogr., 35, 13-32.

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Kara, A. B., A. J. Wallcraft, and H. E. Hurlburt, 2005: Sea surface temperature sensitivity to water turbidity from simulations of the turbid Black Sea using HYCOM*. J. Phys. Oceanogr., 35, 33-54.

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Shaji, C., C. Wang, G.R. Halliwell, Jr., and A.J. Wallcraft, 2005: Simulation of tropical Pacific and Atlantic Oceans using a hybrid coordinate ocean model. Ocean Modelling, 9, 253-282.

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Birol F., J.-M. Brankart, F. Castruccio, P. Brasseur, and J. Verron, 2004: Impact of the Ocean Mean Dynamic Topography on Satellite Data Assimilation. Mar. Geodesy, 27, 59-78.

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Han, W., P.J. Webster, R. Lukas, P. Hacker, and A. Hu, 2004: Impact of atmospheric intraseasonal variability in the Indian Ocean: low-frequency rectification in equatorial surface current and transport. J. Phys. Oceanogr., 34, 1350-1372.

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Halliwell, G.R., 2004: Evaluation of vertical coordinate and vertical mixing algorithms in the HYbrid Coordinate Ocean Model (HYCOM). Ocean Modelling, 7, 285-322.

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Thacker, W.C., S.-K. Lee, and G.R. Halliwell, Jr., 2004: Assimilating 20 years of Atlantic XBT data into HYCOM: a first look. Ocean Modeling, 7, 183-210.

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Bleck, R., and S. Sun, 2004: Diagnostics of the oceanic thermohaline circulation in a coupled climate model. Global and Planetary Change, 40, 233-248.

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Thacker, W.C., 2003: Data-model-error compatibility. Ocean Modeling, 5, 233-247.

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Halliwell, Jr., G.R., R.H. Weisberg, and D.A. Mayer, 2003: A synthetic float analysis of upper-limb meridional overturning circulation interior ocean pathways in the tropical/subtropical atlantic. Interhemispheric Water Exchange in the Atlantic Ocean, P. Malanotte-Rizzoli and G. Goni, eds., Elsevier, 93-136.

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Chassignet, E.P., L.T. Smith, G.R. Halliwell, and R. Bleck, 2003: North Atlantic simulation with the HYbrid Coordinate Ocean Model (HYCOM): Impact of the vertical coordinate choice, reference density, and thermobaricity. J. Phys. Oceanogr., 33, 2504-2526.

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Sun, S., and J. Hansen, 2003: Climate simulations for 1951-2050 with a coupled atmoshere-ocean model. J. Climate, 16, 2807-2826.

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Bleck, R., 2002: An oceanic general circulation model framed in hybrid isopycnic-cartesian coordinates. Ocean Modelling, 4, 55-88.

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Thacker, W. C., and O. E. Esenkov, 2002: Assimilating {XBT} data into HYCOM. Journal of Atmospheric and Oceanic Technology, 19, 709-724.

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Stammer, D., and E.P. Chassignet, 2000: Ocean state estimation and prediction in support of oceanographic research. Oceanography, 13, 51-56.

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Griffies, S.M., et al.: Coordinated Ocean-Ice Reference Experiments (COREs). Ocean Modelling, v. 26, iss. 1-2, p. 1-46.

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F. Counillon, P. Sakov, L. Bertino (2009). Application of a hybrid EnKF-OI to ocean forecasting. Ocean Science, 5, 389-401, 2009.

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Broquet, G., Brasseur, P., Rozier, D., Brankart, J., Verron, J., Estimation of model errors generated by atmospheric forcings for ocean data assimilation: experiments in a regional model of the Bay of Biscay, Ocean Dynamics (2008) 58:1–17, Doi: 10.1007/s10236-007-0128-z.

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Sun, S., Bleck, R., Geographic distribution of the diapycnal component of thermohaline circulations in coupled climate models, Ocean Modelling 15 (2006) 177–199.

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Sun, S., Bleck, R., Multi-century simulations with the coupled GISS–HYCOM climate model: control experiments, Climate Dynamics (2006) 26: 407–428 DOI 10.1007/s00382-005-0091-7.

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Cox, A.T. and Cardone V.J., and Counillon F., and Szabo, D., (2005), Hindcast study of winds, waves and currents in the northern Gulf of Mexico in Hurricane Ivan (2004), OTC, 17736, 2005

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Sun, S., Bleck, R., Atlantic Thermohaline Circulation and its Response to Increasing CO2 in a Coupled Atmosphere–Ocean Model, GEOPHYSICAL RESEARCH LETTERS, VOL. 28, NO. 22, PAGES 4223-4226, NOVEMBER 15, 2001.

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